All functions
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aue.dataAngle
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Angles for an XY coordinates matrix |
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aue.df2image
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Transforming a data frame into a raster |
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aue.image2df
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Transforming a raster into a data frame with cartesian coordinates |
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aue.phenosimil
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Phenotypic similarity for vector, matrix or data frame acoording to Ritland (1996) |
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aue.rescale
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Scaling a data frame or matrix to [0, 1] or [-1, 1] ranges |
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aue.sort
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Ordering the content of cells in a matrix. Ordering alleles in a genetic matrix. |
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data coordinates
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Coordinates |
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eco.alfreq
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Allelic frequency histograms for an ecogen genetic data frame |
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eco.association
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Chi-square and Fisher's exact test for association of loci and alleles
with a factor |
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eco.bearing
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Angular Spatial Weights |
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eco.cbind
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Combining ecogen object by column |
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eco.clear
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Clearing the working environment, maintaining only the specified objects |
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eco.convert
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Conversion utility for genetic data |
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eco.cormantel
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Mantel and partial Mantel correlograms, omnidirectional and directional |
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eco.correlog
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Moran's I, Geary's C and bivariate Moran's I correlograms, omnidirectional and directional |
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eco.detrend
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Detrending spatial data with polynomial interpolation |
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eco.format
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Format tool for genetic data |
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eco.formula
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Formula construction for ecogen objects |
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eco.gsa
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Global spatial analysis |
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eco.kin.loiselle
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Obtention of the multilocus Loiselle's Fij matrix |
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eco.lagweight
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Obtention of a list of spatial weights for classes
defined by inter-individual distances or nearest-neighbors |
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eco.listw2ew
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Conversion from listw to ecoweight |
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summary
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Summary for eco.lmtree output |
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eco.lmtree
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Fitting Multiple Linear Regression models by stepwise AIC selection and
Multiple Classification and Regression Trees via party |
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eco.lsa
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Local spatial analysis |
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eco.malecot
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Global and local kinship analysis |
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eco.mantel
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Mantel and partial Mantel tests, with truncation option |
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eco.merge
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Merging two ecogen objects. Ordering the rows of an ecogen
object according to the rows of another |
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plot
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plot eco.multilsa |
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eco.NDVI.post
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Postprocessing for NDVI and MSAVI2 temporal series of Landsat 5 and 7 |
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eco.NDVI
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Generation of atmospherically corrected NDVI and MSAVI2 images for
temporal series of Landsat 5 and 7 |
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eco.order
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Functions deprecated in EcoGenetics version 1.2.0-2 |
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eco.pairtest
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Kruskall - Wallis + Wilcoxon (Mann-Whitney U) and aov + Tukey-HSD tests
for an ecogen object |
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eco.plotCorrelog
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eco.plotCorrelog |
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eco.plotCorrelogB
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eco.plotCorrelogB |
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eco.plotGlobal
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GSA plot methods |
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eco.plotLocal
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eco.plotLocal |
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eco.plotWeight
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Plot for a connection network |
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eco.post.geneland
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Log posterior probability plot for Geneland repetitions with fixed K |
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eco.rasterplot
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rasterplot graph for eco.lsa results |
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eco.rasterplot
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Rasterplot graphs |
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eco.rbind
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Combining ecogen objects by row |
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data eco
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Eco |
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eco.remove
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Creating an updated ecogen object by removing results of the slot OUT |
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eco.slide.con
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Sliding a window along a connection network |
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eco.slide.matrix
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Sliding window for matrix data |
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eco.split
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Splitting an ecogen object by group |
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eco.subset
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Subsetting an ecogen object by group |
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eco.theilsen
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Theil-sen regression for a raster time series |
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eco.variogram
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Empirical variogram |
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eco.weight
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Spatial weights |
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data eco2
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Eco2 |
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data eco3
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Eco3 |
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ecogen
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Creating a new ecogen object |
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ecogen2geneland
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Creating input data for Geneland with an ecogen object |
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ecogen2genepop
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Exporting an ecogen genetic data frame into Genepop format |
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ecogen2genind genind2ecogen
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Conversion form ecogen to genind and genind to ecogen |
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ecogen2gstudio gstudio2ecogen
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Conversion from ecogen to gstudio and gstudio to ecogen |
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ecogen2hierfstat
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Converting an ecogen genetic data frame into a hierfstat data frame |
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ecogen2spagedi
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Exporting an ecogen genetic data frame into SPAGeDi format |
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EcoGenetics-package
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Management and Exploratory Analysis of Spatial Data in Landscape Genetics |
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data environment
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environment |
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eco.forestplot
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Forestplot graphs |
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genepop2ecogen
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Importing a Genepop file |
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data genotype
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genotype |
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grf.multiplot
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Multiple plot function for ggplot |
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grf.seqmultiplot
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Plot a ggplot sequence in layers of n plots arranged in k rows |
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data phenotype
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phenotype |
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eco.rankplot
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Rankplot graphs |
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spagedi2ecogen
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Importing a SPAGeDi file, via conversion to ecogen |
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data structure
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structure |
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data tab
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tab |
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data table.sokal
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table.sokal |